Skip to content

Publications

155 entries « 2 of 8 »

2020

Atolia E; Cesar S; Arjes H A; Rajendram M; Shi H; Knapp B D; Khare S; Aranda-Díaz A; Lenski R E; Huang K C

Environmental and Physiological Factors Affecting High-Throughput Measurements of Bacterial Growth Journal Article

mBio, 11 (5), pp. 1–19, 2020, ISSN: 2161-2129.

Abstract | Links | BibTeX | Altmetric | Tags: Demography and Ecology

Maddamsetti R; Grant N A

Divergent Evolution of Mutation Rates and Biases in the Long-Term Evolution Experiment with Escherichia coli Journal Article

Genome Biology and Evolution, 12 (9), pp. 1591-1603, 2020, ISSN: 1759-6653.

Abstract | Links | BibTeX | Altmetric | Tags: Genome Evolution, Mutation Rates

Blount Z D; Maddamsetti R; Grant N A; Ahmed S T; Jagdish T; Baxter J A; Sommerfeld B A; Tillman A; Moore J; Slonczewski J L; Barrick J E; Lenski R E

Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment Journal Article

eLife, 9 , pp. 1–64, 2020, ISSN: 2050-084X.

Abstract | Links | BibTeX | Altmetric | Tags: Citrate Evolution, Demography and Ecology, Descendant Experiments, Genotypes and Phenotypes

Barrick J E; Deatherage D E; Lenski R E

A Test of the Repeatability of Measurements of Relative Fitness in the Long-Term Evolution Experiment with Escherichia coli Book Chapter

Banzhaf, Wolfgang; Cheng, Betty H C; Deb, Kalyanmoy; Holekamp, Kay E; Lenski, Richard E; Ofria, Charles; Pennock, Robert T; Punch, William F; Whittaker, Danielle J (Ed.): Evolution in Action: Past, Present and Future: A Festschrift in Honor of Erik D. Goodman, pp. 77–89, Springer International Publishing, Cham, 2020, ISBN: 978-3-030-39831-6.

Abstract | Links | BibTeX | Altmetric | Tags: Fitness Trajectories

2019

Card K J; LaBar T; Gomez J B; Lenski R E

Historical contingency in the evolution of antibiotic resistance after decades of relaxed selection Journal Article

PLOS Biology, 17 (10), pp. e3000397, 2019, ISSN: 1545-7885.

Abstract | Links | BibTeX | Altmetric | Tags: Correlated Responses, Descendant Experiments, Historical Contingency

Lamrabet O; Plumbridge J; Martin M; Lenski R E; Schneider D; Hindré T

Plasticity of Promoter-Core Sequences Allows Bacteria to Compensate for the Loss of a Key Global Regulatory Gene Journal Article

Molecular Biology and Evolution, 36 (6), pp. 1121–1133, 2019, ISSN: 0737-4038.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments

Lamrabet O; Martin M; Lenski R E; Schneider D

Changes in Intrinsic Antibiotic Susceptibility during a Long-Term Evolution Experiment with Escherichia coli Journal Article

mBio, 10 (2), pp. 1–12, 2019, ISSN: 2161-2129.

Abstract | Links | BibTeX | Altmetric | Tags: Correlated Responses

2018

Blount Z D; Lenski R E; Losos J B

Contingency and determinism in evolution: Replaying life's tape Journal Article

Science, 362 (6415), pp. eaam5979, 2018, ISSN: 0036-8075.

Abstract | Links | BibTeX | Altmetric | Tags: Historical Contingency, Parallelism and Divergence, Review Articles

Bajić D; Vila J C C; Blount Z D; Sánchez A

On the deformability of an empirical fitness landscape by microbial evolution Journal Article

Proceedings of the National Academy of Sciences, 115 (44), pp. 11286-11291, 2018, ISSN: 0027-8424.

Abstract | Links | BibTeX | Altmetric | Tags: Citrate Evolution, Demography and Ecology, Theory and Simulations

Leon D; D'Alton S; Quandt E M; Barrick J E

Innovation in an E. coli evolution experiment is contingent on maintaining adaptive potential until competition subsides Journal Article

PLOS Genetics, 14 (4), pp. e1007348, 2018, ISSN: 1553-7404.

Abstract | Links | BibTeX | Altmetric | Tags: Citrate Evolution, Demography and Ecology, Historical Contingency

Lenski R E; Burnham T C

Experimental evolution of bacteria across 60,000 generations, and what it might mean for economics and human decision-making Journal Article

Journal of Bioeconomics, 20 (1), pp. 107–124, 2018, ISSN: 1387-6996.

Abstract | Links | BibTeX | Altmetric | Tags: Methods and Miscellaneous

Peng F; Widmann S; Wünsche A; Duan K; Donovan K A; Dobson R C J; Lenski R E; Cooper T F

Effects of Beneficial Mutations in pykF Gene Vary over Time and across Replicate Populations in a Long-Term Experiment with Bacteria Journal Article

Molecular Biology and Evolution, 35 (1), pp. 202–210, 2018, ISSN: 0737-4038.

Abstract | Links | BibTeX | Altmetric | Tags: Genotypes and Phenotypes, Historical Contingency

Maddamsetti R; Lenski R E

Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selection Journal Article

PLOS Genetics, 14 (1), pp. e1007199, 2018, ISSN: 1553-7404.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Genome Evolution

2017

Lenski R E

What is adaptation by natural selection? Perspectives of an experimental microbiologist Journal Article

PLOS Genetics, 13 (4), pp. e1006668, 2017, ISSN: 1553-7404.

Abstract | Links | BibTeX | Altmetric | Tags: Review Articles

Deatherage D E; Kepner J L; Bennett A F; Lenski R E; Barrick J E

Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures Journal Article

Proceedings of the National Academy of Sciences, 114 (10), pp. E1904–E1912, 2017, ISSN: 0027-8424.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments

Good B H; McDonald M J; Barrick J E; Lenski R E; Desai M M

The dynamics of molecular evolution over 60,000 generations Journal Article

Nature, 551 (7678), pp. 45–50, 2017, ISSN: 14764687.

Abstract | Links | BibTeX | Altmetric | Tags: Demography and Ecology, Genome Evolution, Historical Contingency, Mutation Rates, Parallelism and Divergence

The dynamics of molecular evolution over 60,000 generations

Maddamsetti R; Hatcher P J; Green A G; Williams B L; Marks D S; Lenski R E

Core genes evolve rapidly in the long-term evolution experiment with Escherichia coli Journal Article

Genome Biology and Evolution, 9 (4), pp. 1072–1083, 2017, ISSN: 17596653.

Abstract | Links | BibTeX | Altmetric | Tags: Genome Evolution, Genotypes and Phenotypes, Mutation Rates

Core genes evolve rapidly in the long-term evolution experiment with Escherichia coli

2016

Großkopf T; Consuegra J; Gaffé J; Willison J C; Lenski R E; Soyer O S; Schneider D

Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment Journal Article

BMC Evolutionary Biology, 16 (1), pp. 163, 2016, ISSN: 1471-2148.

Abstract | Links | BibTeX | Altmetric | Tags: Demography and Ecology, Theory and Simulations

Tenaillon O; Barrick J E; Ribeck N; Deatherage D E; Blanchard J L; Dasgupta A; Wu G C; Wielgoss S; Cruveiller S; Medigue C; Schneider D; Lenski R E

Tempo and mode of genome evolution in a 50,000-generation experiment. Journal Article

Nature, 536 (7615), pp. 165–170, 2016, ISSN: 1476-4687.

Abstract | Links | BibTeX | Altmetric | Tags: Genome Evolution, Mutation Rates, Parallelism and Divergence

Tempo and mode of genome evolution in a 50,000-generation experiment.

Blount Z D

A case study in evolutionary contingency Journal Article

Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 58 , pp. 82–92, 2016, ISSN: 13698486.

Abstract | Links | BibTeX | Altmetric | Tags: Review Articles

155 entries « 2 of 8 »