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Publications

151 entries « 1 of 8 »

2022

Mathé-Hubert H; Amie R; Martin M; Gaffé J; Schneider D

Evolution of Bacterial Persistence to Antibiotics during a 50,000-Generation Experiment in an Antibiotic-Free Environment Journal Article

2022-04-30, 11 (4), pp. 451, 2022, ISSN: 2079-6382.

Abstract | Links | BibTeX | Altmetric | Tags: Correlated Responses, Genotypes and Phenotypes

Jordan J A; Lenski R E; Card K J

Idiosyncratic fitness costs of ampicillin-resistant mutants derived from a long-term experiment with Escherichia coli Journal Article

Antibiotics, 11 (3), pp. 347, 2022, ISSN: 2079-6382.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments

Ascensao J A; Wetmore K M; Good B H; Arkin A P; Hallatschek O

Quantifying the Adaptive Potential of a Nascent Bacterial Community Journal Article Forthcoming

bioRxiv, Forthcoming.

Abstract | Links | BibTeX | Altmetric | Tags: Demography and Ecology, Descendant Experiments, Genome Evolution, Genotypes and Phenotypes

2021

Izutsu M; Lake D M; Matson Z W D; Dodson J P; Lenski R E

Effects of periodic bottlenecks on the dynamics of adaptive evolution in microbial populations Journal Article Forthcoming

10.1101/2021.12.29.474457, Forthcoming.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Fitness Trajectories, Theory and Simulations

Consuegra J; Gaffé J; Lenski R E; Hindré T; Barrick J E; Tenaillon O; Schneider D

Insertion-sequence-mediated mutations both promote and constrain evolvability during a long-term experiment with bacteria Journal Article

Nature Communications, 12 (1), pp. 980, 2021, ISSN: 2041-1723.

Abstract | Links | BibTeX | Altmetric | Tags: Fitness Trajectories, Genome Evolution, Mutation Rates

Deatherage D E; Barrick J E

High-throughput characterization of mutations in genes that drive clonal evolution using multiplex adaptome capture sequencing Journal Article

Cell Systems, 2021, ISSN: 24054712.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Fitness Trajectories, Methods and Miscellaneous

High-throughput characterization of mutations in genes that drive clonal evolution using multiplex adaptome capture sequencing

van Raay K; Stolyar S; Sevigny J; Draghi J; Lenski R E; Marx C J; Kerr B; Zaman L

Evolution with private resources reverses some changes from long-term evolution with public resources Unpublished

bioRxiv, 2021.

Abstract | Links | BibTeX | Altmetric | Tags: Cell Morphology, Correlated Responses, Demography and Ecology, Descendant Experiments, Genotypes and Phenotypes, Historical Contingency, Methods and Miscellaneous

Grant N A; Maddamsetti R; Lenski R E

Maintenance of Metabolic Plasticity despite Relaxed Selection in a Long-Term Evolution Experiment with Escherichia coli Journal Article

The American Naturalist, 198 (1), pp. 93–112, 2021, ISSN: 0003-0147.

Abstract | Links | BibTeX | Altmetric | Tags: Correlated Responses, Fitness Trajectories, Genome Evolution, Genotypes and Phenotypes

Karkare K; Lai H; Azevedo R B R; Cooper T F

Historical Contingency Causes Divergence in Adaptive Expression of the lac Operon Journal Article

Molecular Biology and Evolution, 38 (7), pp. 2869–2879, 2021, ISSN: 1537-1719.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments

Card K J; Jordan J A; Lenski R E

Idiosyncratic variation in the fitness costs of tetracycline-resistance mutations in Escherichia coli Journal Article

Evolution, 75 (5), pp. 1230-1238, 2021, ISSN: 0014-3820.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments

Card K J; Thomas M D; Graves J L; Barrick J E; Lenski R E

Genomic evolution of antibiotic resistance is contingent on genetic background following a long-term experiment with Escherichia coli Journal Article

Proceedings of the National Academy of Sciences, 118 (5), pp. e2016886118, 2021, ISSN: 0027-8424.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Genome Evolution, Historical Contingency

Marshall D J; Malerba M; Lines T; Sezmis A L; Hasan C M; Lenski R E; McDonald M J

Long-term experimental evolution decouples size and production costs in Escherichia coli Unpublished

bioRxiv, 2021.

Abstract | Links | BibTeX | Altmetric | Tags: Cell Morphology, Demography and Ecology

Gifford I; Dasgupta A; Barrick J E

Rates of gene conversions between Escherichia coli ribosomal operons Journal Article

G3: Genes, Genomes, Genetics, 11 (2), 2021, ISSN: 21601836.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Mutation Rates

Maddamsetti R

Selection Maintains Protein Interactome Resilience in the Long-Term Evolution Experiment with Escherichia coli Journal Article

Genome Biology and Evolution, 13 (6), 2021.

Abstract | Links | BibTeX | Altmetric | Tags: Genome Evolution, Genotypes and Phenotypes

Maddamsetti R

Universal Constraints on Protein Evolution in the Long-Term Evolution Experiment with Escherichia coli Journal Article

Genome Biology and Evolution, 13 (6), 2021.

Abstract | Links | BibTeX | Altmetric | Tags: Genome Evolution, Genotypes and Phenotypes

Grant N A; abdel Magid A; Franklin J; Dufour Y; Lenski R E

Changes in cell size and shape during 50,000 generations of experimental evolution with Escherichia coli Journal Article

Journal of Bacteriology, 203 (10), pp. e00469-20, 2021.

Abstract | Links | BibTeX | Altmetric | Tags: Cell Morphology, Genotypes and Phenotypes

Changes in cell size and shape during 50,000 generations of experimental evolution with Escherichia coli

2020

Atolia E; Cesar S; Arjes H A; Rajendram M; Shi H; Knapp B D; Khare S; Aranda-Díaz A; Lenski R E; Huang K C

Environmental and Physiological Factors Affecting High-Throughput Measurements of Bacterial Growth Journal Article

mBio, 11 (5), pp. 1–19, 2020, ISSN: 2161-2129.

Abstract | Links | BibTeX | Altmetric | Tags: Demography and Ecology

Maddamsetti R; Grant N A

Divergent Evolution of Mutation Rates and Biases in the Long-Term Evolution Experiment with Escherichia coli Journal Article

Genome Biology and Evolution, 12 (9), pp. 1591-1603, 2020, ISSN: 1759-6653.

Abstract | Links | BibTeX | Altmetric | Tags: Genome Evolution, Mutation Rates

Blount Z D; Maddamsetti R; Grant N A; Ahmed S T; Jagdish T; Baxter J A; Sommerfeld B A; Tillman A; Moore J; Slonczewski J L; Barrick J E; Lenski R E

Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment Journal Article

eLife, 9 , pp. 1–64, 2020, ISSN: 2050-084X.

Abstract | Links | BibTeX | Altmetric | Tags: Citrate Evolution, Demography and Ecology, Descendant Experiments, Genotypes and Phenotypes

Barrick J E; Deatherage D E; Lenski R E

A Test of the Repeatability of Measurements of Relative Fitness in the Long-Term Evolution Experiment with Escherichia coli Book Chapter

Banzhaf, Wolfgang; Cheng, Betty H C; Deb, Kalyanmoy; Holekamp, Kay E; Lenski, Richard E; Ofria, Charles; Pennock, Robert T; Punch, William F; Whittaker, Danielle J (Ed.): Evolution in Action: Past, Present and Future: A Festschrift in Honor of Erik D. Goodman, pp. 77–89, Springer International Publishing, Cham, 2020, ISBN: 978-3-030-39831-6.

Abstract | Links | BibTeX | Altmetric | Tags: Fitness Trajectories

151 entries « 1 of 8 »