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Publications

156 entries « 1 of 8 »

2022

Izutsu M; Lenski R E

Experimental test of the contributions of initial variation and new mutations to adaptive evolution in a novel environment Journal Article

Frontiers in Ecology and Evolution, 10 , pp. 958406, 2022, ISSN: 2296-701X.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Historical Contingency, Parallelism and Divergence

Maddamsetti R; Grant N A

Discovery of positive and purifying selection in metagenomic time series of hypermutator microbial populations Journal Article Forthcoming

PLOS Genetics, 18 (8), pp. e1010324, Forthcoming, ISSN: 1553-7404.

Abstract | Links | BibTeX | Altmetric | Tags:

Mathé-Hubert H; Amie R; Martin M; Gaffé J; Schneider D

Evolution of bacterial persistence to antibiotics during a 50,000-generation experiment in an antibiotic-free environment Journal Article

Antibiotics, 11 (4), pp. 451, 2022, ISSN: 2079-6382.

Abstract | Links | BibTeX | Altmetric | Tags: Correlated Responses, Genotypes and Phenotypes

Jordan J A; Lenski R E; Card K J

Idiosyncratic fitness costs of ampicillin-resistant mutants derived from a long-term experiment with Escherichia coli Journal Article

Antibiotics, 11 (3), pp. 347, 2022, ISSN: 2079-6382.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments

Limdi A; Owen S V; Herren C; Lenski R E; Baym M

Parallel changes in gene essentiality over 50,000 generations of evolution Unpublished Forthcoming

Forthcoming.

Abstract | Links | BibTeX | Altmetric | Tags: Fitness Trajectories, Genome Evolution, Parallelism and Divergence

Parallel changes in gene essentiality over 50,000 generations of evolution

Couce A; Magnan M; Lenski R E; Tenaillon O

The evolution of fitness effects during long-term adaptation in bacteria Unpublished Forthcoming

Forthcoming.

Abstract | Links | BibTeX | Altmetric | Tags: Fitness Trajectories, Genome Evolution, Historical Contingency

The evolution of fitness effects during long-term adaptation in bacteria

Ascensao J A; Wetmore K M; Good B H; Arkin A P; Hallatschek O

Quantifying the adaptive potential of a nascent bacterial community Unpublished Forthcoming

Forthcoming.

Abstract | Links | BibTeX | Altmetric | Tags: Demography and Ecology, Descendant Experiments, Genome Evolution, Genotypes and Phenotypes

2021

Izutsu M; Lake D M; Matson Z W D; Dodson J P; Lenski R E

Effects of periodic bottlenecks on the dynamics of adaptive evolution in microbial populations Unpublished Forthcoming

Forthcoming.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Fitness Trajectories, Theory and Simulations

Consuegra J; Gaffé J; Lenski R E; Hindré T; Barrick J E; Tenaillon O; Schneider D

Insertion-sequence-mediated mutations both promote and constrain evolvability during a long-term experiment with bacteria Journal Article

Nature Communications, 12 (1), pp. 980, 2021, ISSN: 2041-1723.

Abstract | Links | BibTeX | Altmetric | Tags: Fitness Trajectories, Genome Evolution, Mutation Rates

Deatherage D E; Barrick J E

High-throughput characterization of mutations in genes that drive clonal evolution using multiplex adaptome capture sequencing Journal Article

Cell Systems, 2021, ISSN: 24054712.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Fitness Trajectories, Methods and Miscellaneous

High-throughput characterization of mutations in genes that drive clonal evolution using multiplex adaptome capture sequencing

van Raay K; Stolyar S; Sevigny J; Draghi J; Lenski R E; Marx C J; Kerr B; Zaman L

Evolution with private resources reverses some changes from long-term evolution with public resources Unpublished Forthcoming

bioRxiv, Forthcoming.

Abstract | Links | BibTeX | Altmetric | Tags: Cell Morphology, Correlated Responses, Demography and Ecology, Descendant Experiments, Genotypes and Phenotypes, Historical Contingency, Methods and Miscellaneous

Grant N A; Maddamsetti R; Lenski R E

Maintenance of Metabolic Plasticity despite Relaxed Selection in a Long-Term Evolution Experiment with Escherichia coli Journal Article

The American Naturalist, 198 (1), pp. 93–112, 2021, ISSN: 0003-0147.

Abstract | Links | BibTeX | Altmetric | Tags: Correlated Responses, Fitness Trajectories, Genome Evolution, Genotypes and Phenotypes

Karkare K; Lai H; Azevedo R B R; Cooper T F

Historical Contingency Causes Divergence in Adaptive Expression of the lac Operon Journal Article

Molecular Biology and Evolution, 38 (7), pp. 2869–2879, 2021, ISSN: 1537-1719.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments

Card K J; Jordan J A; Lenski R E

Idiosyncratic variation in the fitness costs of tetracycline-resistance mutations in Escherichia coli Journal Article

Evolution, 75 (5), pp. 1230-1238, 2021, ISSN: 0014-3820.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments

Card K J; Thomas M D; Graves J L; Barrick J E; Lenski R E

Genomic evolution of antibiotic resistance is contingent on genetic background following a long-term experiment with Escherichia coli Journal Article

Proceedings of the National Academy of Sciences, 118 (5), pp. e2016886118, 2021, ISSN: 0027-8424.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Genome Evolution, Historical Contingency

Favate J S; Liang S; Yadavilli S S; Shah P

The landscape of transcriptional and translational changes over 22 years of bacterial adaptation Unpublished Forthcoming

bioRxiv, Forthcoming.

Abstract | Links | BibTeX | Altmetric | Tags: Genotypes and Phenotypes, Parallelism and Divergence

Marshall D J; Malerba M; Lines T; Sezmis A L; Hasan C M; Lenski R E; McDonald M J

Long-term experimental evolution decouples size and production costs in Escherichia coli Unpublished Forthcoming

bioRxiv, Forthcoming.

Abstract | Links | BibTeX | Altmetric | Tags: Cell Morphology, Demography and Ecology

Gifford I; Dasgupta A; Barrick J E

Rates of gene conversions between Escherichia coli ribosomal operons Journal Article

G3: Genes, Genomes, Genetics, 11 (2), 2021, ISSN: 21601836.

Abstract | Links | BibTeX | Altmetric | Tags: Descendant Experiments, Mutation Rates

Maddamsetti R

Selection Maintains Protein Interactome Resilience in the Long-Term Evolution Experiment with Escherichia coli Journal Article

Genome Biology and Evolution, 13 (6), 2021.

Abstract | Links | BibTeX | Altmetric | Tags: Genome Evolution, Genotypes and Phenotypes

Maddamsetti R

Universal Constraints on Protein Evolution in the Long-Term Evolution Experiment with Escherichia coli Journal Article

Genome Biology and Evolution, 13 (6), 2021.

Abstract | Links | BibTeX | Altmetric | Tags: Genome Evolution, Genotypes and Phenotypes

156 entries « 1 of 8 »